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Computer simulation mimics how the brain grows neurons, paving the way for future disease treatments

by Medical Xpress
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3D Mechanistic ABM for neuronal growth. Panel a shows the agent-based discretization and the early stage of a neuron simulation (pyramidal cell). The center is the spherical soma (cell body). The dendrites are discretized with small, cylindrical agents. Typically, the tips drive the growth (Shree et al. 2022); hence, we differentiate between the general and tip agents. The agents define a tree-like structure with different segments and branches. b Pyramidal cell at the end of the simulation. c Experimental pyramidal cell in the mouse hippocampus observed by Benavides-Piccione et al. (2019) ( NMO_147071). Credit: Journal of Mathematical Biology (2024). DOI: 10.1007/s00285-024-02144-2

A new computer simulation of how our brains develop and grow neurons has been built by scientists from the University of Surrey. Along with improving our understanding of how the brain works, researchers hope that the models will contribute to neurodegenerative disease research and, someday, stem cell research that helps regenerate brain tissue.

The research has been published in the Journal of Mathematical Biology.

The research team used a technique called Approximate Bayesian Computation (ABC), which helps fine-tune the model by comparing the simulation with real neuron growth. This process ensures that the artificial brain accurately reflects how neurons grow and form connections in real life.

The simulation was tested using neurons from the hippocampus—a critical region of the brain involved in memory retention. The team found that their system successfully mimicked the growth patterns of real hippocampal neurons, showing the potential of this technology to simulate in fine detail.

Dr. Roman Bauer from the University of Surrey’s School of Computer Science and Electronic Engineering said, “How our brain works is still one of the greatest mysteries in science. With this simulation, and the rapid advancements in , we’re getting closer to understanding how neurons grow and communicate. We hope that one day this work could lead to better treatments for devastating diseases like Alzheimer’s or Parkinson’s—changing lives for millions.”

The accuracy of the model is closely tied to the quality of the data used to calibrate it. If the real-life neuron data is limited or incomplete, the precision of the simulation may decrease. While the current model has shown impressive results in replicating the growth of specific neurons, such as hippocampal pyramidal cells, further adjustments may be needed to accurately simulate other types of or regions of the brain.

The computer is built from the BioDynaMo software, which Dr. Bauer co-developed. The software supports scientists to easily create, run, and visualize multi-dimensional agent-based simulations, be they biological, sociological, ecological or financial.

More information:
Tobias Duswald et al, Calibration of stochastic, agent-based neuron growth models with approximate Bayesian computation, Journal of Mathematical Biology (2024). DOI: 10.1007/s00285-024-02144-2

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Computer simulation mimics how the brain grows neurons, paving the way for future disease treatments (2024, October 10)
retrieved 10 October 2024
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